PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn191261
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family B3
Protein Properties Length: 675aa    MW: 74493.8 Da    PI: 8.6103
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn191261genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.51.1e-17233344199
                 EEEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                 f+kvl+ sd+++ grlvlpk +ae +              +++ e++ ++++d +g++W++++++  +++s++yvl+ G     +  +L++gD+v+F++
  Achn191261 233 FEKVLSASDAGRIGRLVLPKACAELYiyvkcklmqayfpPISQSEGVPIRIQDIKGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDTVIFSR 330
                 99*********************999*****99999999666678999***************9989999999***9.********************8 PP

                 -SSSEE..EEEEE-S CS
          B3  85 dgrsefelvvkvfrk 99 
                 ++  +++lv++++++
  Achn191261 331 ID-PGGKLVMGFRKA 344
                 87.788888887765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-26229350IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.19E-18230344IPR015300DNA-binding pseudobarrel domain
CDDcd100177.87E-22231343No hitNo description
SMARTSM010195.3E-17233345IPR003340B3 DNA binding domain
PROSITE profilePS5086310.32233345IPR003340B3 DNA binding domain
PfamPF023625.6E-15233343IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MHKLCKEFGD SSGKTYSANK NSDPQSSFVE NRMSGISSDK QKLMKLSKAM DAKELNHFPQ  60
PWKSESNACN GKIKREEIML STGEVGTGFP GLIQLVGPSI SAKSENSRQK FGLTDMCELL  120
AQPSLSFSLS TPLDTPNSLV PPPGDVVEGR KQNKIPPFQQ GQRTRHILPK PSKIGLTIGS  180
EENNISVSQT RVARPPAEGR GRTQLLPRYW PRITDQELQQ ISGDLNSTIV PLFEKVLSAS  240
DAGRIGRLVL PKACAELYIY VKCKLMQAYF PPISQSEGVP IRIQDIKGKE WTFQFRFWPN  300
NNSRMYVLEG VTPCIQNMQL QAGDTVIFSR IDPGGKLVMG FRKASNSVDM QDSQTSSLAN  360
GVSSGETSTS GVNDNLPTKH GGRTNEDLSQ RPMLVPEKKR SRNIGSKCKR LLMHSEDAMA  420
LRLTWAEAQE LLRPPPSVKP TVVMVEDREF EEYEAKSKKR RITERRNVPQ ESEPSGLDAL  480
ATAAVLGADA GDPDDPSAGP TTKHPRHRPG CTCIVCIQPP SGKGRHKSTC ICNVCLTVKR  540
RFKTRKKKRE REAEIARGKD LGPTKDEPEV HVNPLKEEDK IKNTIPKDVA ETGKGQLDLN  600
CDPNREDDVL GLMSLVHAAN LPLEMYLMQN GIADLGTCLL SQTVGEIESL RPNEGCVSSS  660
IVERENHENH GDER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A5e-1223235713129DNA-binding protein RAV1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1538548KRRFKTRKKKR
2539549RRFKTRKKKRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009772834.10.0PREDICTED: B3 domain-containing transcription repressor VAL1-like
SwissprotQ6Z3U31e-113Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA5AZP00.0A5AZP0_VITVI; Putative uncharacterized protein
STRINGSolyc06g082520.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14912365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-111HSI2-like 1